mirror of
https://github.com/nowcommunity/nowdatabase.git
synced 2026-10-12 19:13:52 +03:00
Updated the initial test sql files
This commit is contained in:
karilint
File diff suppressed because one or more lines are too long
@@ -0,0 +1,786 @@
|
||||
/**
|
||||
* LOCALITY
|
||||
**/
|
||||
|
||||
/*** creates view used by locality list ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_list;
|
||||
CREATE VIEW now_v_locality_list
|
||||
AS
|
||||
SELECT
|
||||
lid, loc_name, country,
|
||||
max_age, min_age,
|
||||
loc_status
|
||||
FROM now_loc;
|
||||
|
||||
/*** creates view used by locality header ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_header;
|
||||
CREATE VIEW now_v_locality_header
|
||||
AS
|
||||
SELECT
|
||||
lid, loc_name, country, state, county, site_area, dms_lat, dms_long, dec_lat, dec_long, approx_coord, altitude,
|
||||
max_age, bfa_max, bfa_max_abs, min_age, bfa_min, bfa_min_abs, date_meth, frac_max, frac_min, age_comm, chron, basin, subbasin,
|
||||
loc_status, gen_loc, plate, loc_detail, lgroup, formation, member, bed, datum_plane, tos, bos, rock_type, rt_adj,
|
||||
lith_comm, depo_context1, depo_context2, depo_context3, depo_context4, depo_comm, sed_env_1, sed_env_2, event_circum,
|
||||
se_comm, climate_type, biome, v_ht, v_struct, v_envi_det, disturb, nutrients, water, seasonality, seas_intens, pri_prod,
|
||||
moisture, temperature, assem_fm, transport, trans_mod, weath_trmp, pt_conc, size_type, vert_pres, plant_pres, invert_pres,
|
||||
time_rep, appr_num_spm, num_spm, true_quant, complete, num_quad, taph_comm, tax_comm
|
||||
FROM now_loc;
|
||||
|
||||
/*** creates view used by locality age form ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_age;
|
||||
CREATE VIEW now_v_locality_age
|
||||
AS
|
||||
SELECT
|
||||
lid, loc_name, country,
|
||||
date_meth,
|
||||
min_age, bfa_min_abs, bfa_min, frac_min,
|
||||
max_age, bfa_max_abs, bfa_max, frac_max,
|
||||
chron, age_comm, basin, subbasin,
|
||||
lgroup, formation, member, bed,
|
||||
datum_plane, tos, bos
|
||||
FROM now_loc;
|
||||
|
||||
/*** creates view used by locality locality form ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_locality;
|
||||
CREATE VIEW now_v_locality_locality
|
||||
AS
|
||||
SELECT
|
||||
lid, loc_name,
|
||||
country, state, county, loc_detail, site_area, gen_loc, plate,
|
||||
dms_lat, dec_lat,
|
||||
dms_long, dec_long,
|
||||
approx_coord,
|
||||
altitude,
|
||||
loc_status
|
||||
FROM now_loc;
|
||||
|
||||
/*** creates view used by locality locality form for synonym table ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_locality_synonym;
|
||||
CREATE VIEW now_v_locality_locality_synonym
|
||||
AS
|
||||
SELECT
|
||||
now_loc.lid, loc_name,
|
||||
syn_id, synonym
|
||||
FROM now_syn_loc
|
||||
LEFT JOIN now_loc ON now_loc.lid = now_syn_loc.lid;
|
||||
|
||||
/*** creates view used by locality lithology form ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_lithology;
|
||||
CREATE VIEW now_v_locality_lithology
|
||||
AS
|
||||
SELECT
|
||||
lid, loc_name, country,
|
||||
rock_type, rt_adj, lith_comm,
|
||||
sed_env_1, sed_env_2, event_circum, se_comm, depo_context1, depo_context2, depo_context3, depo_context4, depo_comm
|
||||
FROM now_loc;
|
||||
|
||||
/*** creates view used by locality ecometrics form ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_ecometrics;
|
||||
CREATE VIEW now_v_locality_ecometrics
|
||||
AS
|
||||
SELECT
|
||||
lid,
|
||||
estimate_precip, estimate_temp, estimate_npp, pers_woody_cover
|
||||
FROM now_loc;
|
||||
|
||||
/*** creates view used by locality ecometrics forms mean hypsodonty calculations ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_ecometrics_mean_hypsodonty;
|
||||
CREATE VIEW now_v_locality_ecometrics_mean_hypsodonty
|
||||
AS
|
||||
SELECT
|
||||
now_ls.lid,
|
||||
ROUND(SUM(CASE WHEN tht = 'bra' THEN 1 WHEN tht = 'mes' THEN 2 WHEN tht = 'hyp' OR tht = 'hys' THEN 3 ELSE 0 END) / COUNT(NULLIF(tht, '')), 2) AS mean_hypsodonty
|
||||
FROM now_ls
|
||||
LEFT JOIN com_species ON com_species.species_id = now_ls.species_id
|
||||
WHERE
|
||||
order_name in ('Perissodactyla', 'Artiodactyla', 'Primates', 'Proboscidea', 'Hyracoidea', 'Dinocerata', 'Embrithopoda', 'Notoungulata', 'Astrapotheria', 'Pyrotheria', 'Litopterna', 'Condylarthra', 'Pantodonta')
|
||||
GROUP BY
|
||||
now_ls.lid;
|
||||
|
||||
/*** creates view used by locality climate form ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_climate;
|
||||
CREATE VIEW now_v_locality_climate
|
||||
AS
|
||||
SELECT
|
||||
lid, loc_name, country,
|
||||
climate_type, temperature, moisture, disturb,
|
||||
biome, v_ht, v_struct, pri_prod,
|
||||
v_envi_det,
|
||||
seasonality, seas_intens,
|
||||
nutrients, water,
|
||||
pers_pollen_ap, pers_pollen_nap, pers_pollen_other
|
||||
FROM now_loc;
|
||||
|
||||
/*** creates view used by locality taphonomy form ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_taphonomy;
|
||||
CREATE VIEW now_v_locality_taphonomy
|
||||
AS
|
||||
SELECT
|
||||
lid, loc_name, country,
|
||||
assem_fm, transport,trans_mod, weath_trmp, pt_conc, size_type,
|
||||
time_rep, vert_pres, appr_num_spm, num_spm, num_quad, true_quant, complete, taph_comm
|
||||
FROM now_loc;
|
||||
|
||||
/*** creates view used by locality species form ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_species;
|
||||
CREATE VIEW now_v_locality_species
|
||||
AS
|
||||
SELECT
|
||||
now_loc.lid, loc_name, country,
|
||||
com_species.species_id, order_name, family_name, subfamily_name,
|
||||
subclass_or_superorder_name, suborder_or_superfamily_name,
|
||||
genus_name, species_name, unique_identifier, taxonomic_status,
|
||||
id_status, orig_entry,
|
||||
nis, pct, quad, mni, qua, source_name,
|
||||
now_ls.body_mass,
|
||||
dc13_mean, dc13_n, dc13_max, dc13_min, dc13_stdev, do18_mean, do18_n, do18_max, do18_min, do18_stdev,
|
||||
now_ls.mesowear, now_ls.mw_or_high, now_ls.mw_or_low, now_ls.mw_cs_sharp, now_ls.mw_cs_round, now_ls.mw_cs_blunt, now_ls.mw_scale_min, now_ls.mw_scale_max, now_ls.mw_value,
|
||||
now_ls.microwear,
|
||||
sp_status, sp_comment
|
||||
FROM now_ls
|
||||
LEFT JOIN com_species ON com_species.species_id=now_ls.species_id
|
||||
LEFT JOIN now_loc ON now_loc.lid = now_ls.lid;
|
||||
|
||||
/*** creates view used by locality museum form ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_museum;
|
||||
CREATE VIEW now_v_locality_museum
|
||||
AS
|
||||
SELECT
|
||||
now_loc.lid, loc_name,
|
||||
com_mlist.museum, institution, city, com_mlist.country
|
||||
FROM now_mus
|
||||
LEFT JOIN com_mlist ON com_mlist.museum=now_mus.museum
|
||||
LEFT JOIN now_loc ON now_loc.lid = now_mus.lid;
|
||||
|
||||
/*** creates view used by locality projects form ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_project;
|
||||
CREATE VIEW now_v_locality_project
|
||||
AS
|
||||
SELECT
|
||||
now_loc.lid, loc_name,
|
||||
now_plr.pid,
|
||||
proj_code, proj_name, contact, proj_status, proj_records,
|
||||
full_name, email
|
||||
FROM now_plr
|
||||
LEFT JOIN now_proj ON now_proj.pid = now_plr.pid
|
||||
LEFT JOIN now_loc ON now_loc.lid = now_plr.lid
|
||||
LEFT JOIN com_people ON com_people.initials = now_proj.contact;
|
||||
|
||||
/*** creates view used by locality updates form ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_updates;
|
||||
CREATE VIEW now_v_locality_updates
|
||||
AS
|
||||
SELECT
|
||||
now_lau.luid, lid, lau_coordinator, lau_authorizer, lau_date,
|
||||
GROUP_CONCAT(now_lr.rid) as rids
|
||||
FROM now_lau, now_lr
|
||||
WHERE now_lau.luid = now_lr.luid
|
||||
GROUP BY now_lau.luid;
|
||||
|
||||
/*** creates view used by locality updates header form ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_update_header;
|
||||
CREATE VIEW now_v_locality_update_header
|
||||
AS
|
||||
SELECT
|
||||
luid,
|
||||
lau_date AS date,
|
||||
l_authorizer.full_name AS authorizer,
|
||||
l_coordinator.full_name AS coordinator,
|
||||
lau_comment AS comment,
|
||||
now_loc.lid, loc_name, now_loc.country
|
||||
FROM now_lau
|
||||
LEFT JOIN com_people AS l_authorizer ON l_authorizer.initials = now_lau.lau_authorizer
|
||||
LEFT JOIN com_people AS l_coordinator ON l_coordinator.initials = now_lau.lau_coordinator
|
||||
LEFT JOIN now_loc ON now_loc.lid = now_lau.lid;
|
||||
|
||||
/*** creates view used by locality archaeology form ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_archaeology;
|
||||
CREATE VIEW now_v_locality_archaeology
|
||||
AS
|
||||
SELECT
|
||||
lid, loc_name,
|
||||
hominin_skeletal_remains, bipedal_footprints, stone_tool_technology, stone_tool_cut_marks_on_bones,
|
||||
technological_mode_1, cultural_stage_1, regional_culture_1,
|
||||
technological_mode_2, cultural_stage_2, regional_culture_2,
|
||||
technological_mode_3, cultural_stage_3, regional_culture_3
|
||||
FROM now_loc;
|
||||
|
||||
/**
|
||||
* SPECIES
|
||||
**/
|
||||
|
||||
/*** creates view used by species list ***/
|
||||
DROP VIEW IF EXISTS now_v_species_list;
|
||||
CREATE VIEW now_v_species_list
|
||||
AS
|
||||
SELECT
|
||||
com_species.species_id,
|
||||
order_name, family_name, subfamily_name,
|
||||
subclass_or_superorder_name, suborder_or_superfamily_name,
|
||||
genus_name, species_name, unique_identifier,
|
||||
sp_status, taxonomic_status, sp_comment, COUNT(com_taxa_synonym.synonym_id) AS syncount
|
||||
FROM com_species
|
||||
LEFT JOIN com_taxa_synonym ON com_taxa_synonym.species_id = com_species.species_id
|
||||
WHERE used_now = 1
|
||||
GROUP BY com_species.species_id;
|
||||
|
||||
/*** creates view used by species header ***/
|
||||
DROP VIEW IF EXISTS now_v_species_header;
|
||||
CREATE VIEW now_v_species_header
|
||||
AS
|
||||
SELECT
|
||||
species_id, class_name, order_name, family_name, subfamily_name, subclass_or_superorder_name, suborder_or_superfamily_name, genus_name, species_name, unique_identifier, common_name, sp_status,
|
||||
taxonomic_status, sp_author, strain, gene, taxon_status, diet1, diet2, diet3, diet_description, rel_fib,
|
||||
selectivity, digestion, feedinghab1, feedinghab2, shelterhab1, shelterhab2, locomo1, locomo2, locomo3, hunt_forage,
|
||||
body_mass, brain_mass, sv_length, activity, sd_size, sd_display, tshm, symph_mob, relative_blade_length, tht, crowntype, microwear, pop_struc,
|
||||
used_morph, used_now, used_gene, sp_comment
|
||||
FROM com_species
|
||||
WHERE used_now = 1
|
||||
GROUP BY species_id;
|
||||
|
||||
/*** creates view used by species taxonomy form ***/
|
||||
DROP VIEW IF EXISTS now_v_species_taxonomy;
|
||||
CREATE VIEW now_v_species_taxonomy
|
||||
AS
|
||||
SELECT
|
||||
species_id,
|
||||
class_name, order_name, family_name, subfamily_name,
|
||||
subclass_or_superorder_name, suborder_or_superfamily_name,
|
||||
genus_name, species_name, unique_identifier, taxonomic_status,
|
||||
sp_author,
|
||||
sp_status,
|
||||
sp_comment
|
||||
FROM com_species
|
||||
WHERE used_now = 1;
|
||||
|
||||
/*** creates view used by species diet form ***/
|
||||
DROP VIEW IF EXISTS now_v_species_diet;
|
||||
CREATE VIEW now_v_species_diet
|
||||
AS
|
||||
SELECT
|
||||
species_id, genus_name, species_name, unique_identifier,
|
||||
diet1, diet2, diet3,
|
||||
rel_fib, selectivity, digestion, hunt_forage
|
||||
FROM com_species
|
||||
WHERE used_now = 1;
|
||||
|
||||
/*** creates view used by species locomotion form ***/
|
||||
DROP VIEW IF EXISTS now_v_species_locomotion;
|
||||
CREATE VIEW now_v_species_locomotion
|
||||
AS
|
||||
SELECT
|
||||
species_id, genus_name, species_name, unique_identifier,
|
||||
feedinghab1, feedinghab2,
|
||||
shelterhab1, shelterhab2,
|
||||
locomo1, locomo2, locomo3, activity
|
||||
FROM com_species
|
||||
WHERE used_now = 1;
|
||||
|
||||
/*** creates view used by species size form ***/
|
||||
DROP VIEW IF EXISTS now_v_species_size;
|
||||
CREATE VIEW now_v_species_size
|
||||
AS
|
||||
SELECT
|
||||
species_id, genus_name, species_name, unique_identifier,
|
||||
body_mass, brain_mass, sv_length,
|
||||
sd_size, sd_display,
|
||||
pop_struc
|
||||
FROM com_species
|
||||
WHERE used_now = 1;
|
||||
|
||||
/*** creates view used by species teeth form ***/
|
||||
DROP VIEW IF EXISTS now_v_species_teeth;
|
||||
CREATE VIEW now_v_species_teeth
|
||||
AS
|
||||
SELECT
|
||||
species_id, genus_name, species_name, unique_identifier,
|
||||
tshm, crowntype, tht, microwear, symph_mob, relative_blade_length, horizodonty,
|
||||
cusp_shape, cusp_count_buccal, cusp_count_lingual, loph_count_lon, loph_count_trs,
|
||||
fct_al, fct_ol, fct_sf, fct_ot, fct_cm,
|
||||
mesowear, mw_or_high, mw_or_low, mw_cs_sharp, mw_cs_round, mw_cs_blunt, mw_scale_min, mw_scale_max, mw_value,
|
||||
CONCAT(
|
||||
CASE WHEN fct_al IS NULL OR fct_al = "" THEN "-" ELSE fct_al END,
|
||||
CASE WHEN fct_ol IS NULL OR fct_ol = "" THEN "-" ELSE fct_ol END,
|
||||
CASE WHEN fct_sf IS NULL OR fct_sf = "" THEN "-" ELSE fct_sf END,
|
||||
CASE WHEN fct_ot IS NULL OR fct_ot = "" THEN "-" ELSE fct_ot END,
|
||||
CASE WHEN fct_cm IS NULL OR fct_cm = "" THEN "-" ELSE fct_cm END
|
||||
) AS functional_crown_type,
|
||||
CONCAT(
|
||||
CASE WHEN cusp_shape IS NULL OR cusp_shape = "" THEN "-" ELSE cusp_shape END,
|
||||
CASE WHEN cusp_count_buccal IS NULL OR cusp_count_buccal = "" THEN "-" ELSE cusp_count_buccal END,
|
||||
CASE WHEN cusp_count_lingual IS NULL OR cusp_count_lingual = "" THEN "-" ELSE cusp_count_lingual END,
|
||||
CASE WHEN loph_count_lon IS NULL OR loph_count_lon = "" THEN "-" ELSE loph_count_lon END,
|
||||
CASE WHEN loph_count_trs IS NULL OR loph_count_trs = "" THEN "-" ELSE loph_count_trs END
|
||||
) AS developmental_crown_type
|
||||
FROM com_species
|
||||
WHERE used_now = 1;
|
||||
|
||||
/*** creates view used by species locality form ***/
|
||||
DROP VIEW IF EXISTS now_v_species_locality;
|
||||
CREATE VIEW now_v_species_locality
|
||||
AS
|
||||
SELECT
|
||||
com_species.species_id, genus_name, species_name, unique_identifier,
|
||||
now_loc.lid, loc_name, country,
|
||||
max_age, min_age,
|
||||
id_status, orig_entry, source_name,
|
||||
nis, pct, quad, mni, qua,
|
||||
now_ls.body_mass,
|
||||
dc13_mean, dc13_n, dc13_max, dc13_min, dc13_stdev, do18_mean, do18_n, do18_max, do18_min, do18_stdev,
|
||||
now_ls.mesowear, now_ls.mw_or_high, now_ls.mw_or_low, now_ls.mw_cs_sharp, now_ls.mw_cs_round, now_ls.mw_cs_blunt, now_ls.mw_scale_min, now_ls.mw_scale_max, now_ls.mw_value,
|
||||
now_ls.microwear,
|
||||
loc_status
|
||||
FROM now_ls
|
||||
LEFT JOIN com_species ON com_species.species_id=now_ls.species_id
|
||||
LEFT JOIN now_loc ON now_loc.lid = now_ls.lid;
|
||||
|
||||
/*** creates view used by species updates form ***/
|
||||
DROP VIEW IF EXISTS now_v_species_updates;
|
||||
CREATE VIEW now_v_species_updates
|
||||
AS
|
||||
SELECT
|
||||
now_sau.suid, species_id, sau_coordinator, sau_authorizer, sau_date,
|
||||
GROUP_CONCAT(now_sr.rid) as rids
|
||||
FROM now_sau, now_sr
|
||||
WHERE now_sau.suid = now_sr.suid
|
||||
GROUP BY now_sau.suid;
|
||||
|
||||
/*** creates view used by species update header form ***/
|
||||
DROP VIEW IF EXISTS now_v_species_update_header;
|
||||
CREATE VIEW now_v_species_update_header
|
||||
AS
|
||||
SELECT
|
||||
suid,
|
||||
sau_date AS date,
|
||||
s_authorizer.full_name AS authorizer,
|
||||
s_coordinator.full_name AS coordinator,
|
||||
sau_comment AS comment,
|
||||
com_species.species_id, genus_name, species_name, unique_identifier
|
||||
FROM now_sau
|
||||
LEFT JOIN com_people AS s_authorizer ON s_authorizer.initials = now_sau.sau_authorizer
|
||||
LEFT JOIN com_people AS s_coordinator ON s_coordinator.initials = now_sau.sau_coordinator
|
||||
LEFT JOIN com_species ON com_species.species_id = now_sau.species_id;
|
||||
|
||||
/**
|
||||
* REFERENCE
|
||||
**/
|
||||
|
||||
/*** creates view used by reference list ***/
|
||||
DROP VIEW IF EXISTS now_v_reference_list;
|
||||
CREATE VIEW now_v_reference_list
|
||||
AS
|
||||
SELECT
|
||||
ref_ref.rid,
|
||||
date_primary, date_secondary, exact_date, title_primary, title_secondary, title_series, ref_ref.journal_id,
|
||||
ref_ref.ref_type_id, volume, issue, start_page, end_page, publisher, pub_place, issn_isbn, ref_abstract, web_url,
|
||||
misc_1, misc_2, gen_notes, printed_language, used_morph, used_now, used_gene,
|
||||
ref_authors.author_surname,
|
||||
ref_journal.journal_title,
|
||||
ref_ref_type.ref_type,
|
||||
IF(title_primary IS NULL OR title_primary = '', IF(title_series IS NULL OR title_series = '', IF(gen_notes IS NULL OR gen_notes = '', '', gen_notes), title_series), title_primary) AS cmb_title,
|
||||
IF(ref_authors.author_surname IS NULL OR ref_authors.author_surname = '', IF(ref_authors2.author_surname IS NULL OR ref_authors2.author_surname = '', IF(ref_authors3.author_surname IS NULL OR ref_authors3.author_surname = '', '', ref_authors3.author_surname), ref_authors2.author_surname), ref_authors.author_surname) AS cmb_author
|
||||
FROM ref_ref
|
||||
LEFT JOIN ref_authors ON ref_authors.rid = ref_ref.rid AND ref_authors.field_id = 2 AND ref_authors.au_num = 1
|
||||
LEFT JOIN ref_authors AS ref_authors2 ON ref_authors2.rid = ref_ref.rid AND ref_authors2.field_id = 12 AND ref_authors2.au_num = 1
|
||||
LEFT JOIN ref_authors AS ref_authors3 ON ref_authors3.rid = ref_ref.rid AND ref_authors3.field_id = 15 AND ref_authors3.au_num = 1
|
||||
LEFT JOIN ref_journal ON ref_journal.journal_id = ref_ref.journal_id
|
||||
LEFT JOIN ref_ref_type ON ref_ref_type.ref_type_id = ref_ref.ref_type_id
|
||||
WHERE used_now = 1;
|
||||
|
||||
/*** creates view used for reference citation ***/
|
||||
DROP VIEW IF EXISTS now_v_ref_cit;
|
||||
CREATE VIEW now_v_ref_cit
|
||||
AS
|
||||
SELECT
|
||||
ref_ref.rid,
|
||||
date_primary, title_primary, title_secondary, gen_notes,
|
||||
volume, issue, start_page, end_page, publisher, pub_place,
|
||||
ref_authors1.author_surname AS author_surname1,
|
||||
ref_authors2.author_surname AS author_surname2,
|
||||
ref_authors3.author_surname AS author_surname3,
|
||||
ref_authors4.author_surname AS author_surname4,
|
||||
ref_editors1.author_surname AS editor_surname1,
|
||||
ref_editors2.author_surname AS editor_surname2,
|
||||
ref_editors3.author_surname AS editor_surname3,
|
||||
ref_editors4.author_surname AS editor_surname4,
|
||||
journal_title,
|
||||
ref_ref.ref_type_id, ref_type
|
||||
FROM ref_ref
|
||||
LEFT JOIN ref_authors AS ref_authors1 ON ref_authors1.rid = ref_ref.rid AND ref_authors1.field_id = 2 AND ref_authors1.au_num = 1
|
||||
LEFT JOIN ref_authors AS ref_authors2 ON ref_authors2.rid = ref_ref.rid AND ref_authors2.field_id = 2 AND ref_authors2.au_num = 2
|
||||
LEFT JOIN ref_authors AS ref_authors3 ON ref_authors3.rid = ref_ref.rid AND ref_authors3.field_id = 2 AND ref_authors3.au_num = 3
|
||||
LEFT JOIN ref_authors AS ref_authors4 ON ref_authors4.rid = ref_ref.rid AND ref_authors4.field_id = 2 AND ref_authors4.au_num = 4
|
||||
LEFT JOIN ref_authors AS ref_editors1 ON ref_editors1.rid = ref_ref.rid AND ref_editors1.field_id = 12 AND ref_editors1.au_num = 1
|
||||
LEFT JOIN ref_authors AS ref_editors2 ON ref_editors2.rid = ref_ref.rid AND ref_editors2.field_id = 12 AND ref_editors2.au_num = 2
|
||||
LEFT JOIN ref_authors AS ref_editors3 ON ref_editors3.rid = ref_ref.rid AND ref_editors3.field_id = 12 AND ref_editors3.au_num = 3
|
||||
LEFT JOIN ref_authors AS ref_editors4 ON ref_editors4.rid = ref_ref.rid AND ref_editors4.field_id = 12 AND ref_editors4.au_num = 4
|
||||
LEFT JOIN ref_journal ON ref_journal.journal_id = ref_ref.journal_id
|
||||
LEFT JOIN ref_ref_type ON ref_ref_type.ref_type_id = ref_ref.ref_type_id
|
||||
WHERE used_now = 1;
|
||||
|
||||
/*** creates view used by reference locality form ***/
|
||||
DROP VIEW IF EXISTS now_v_reference_locality;
|
||||
CREATE VIEW now_v_reference_locality
|
||||
AS
|
||||
SELECT DISTINCT
|
||||
rid,
|
||||
now_loc.lid, loc_name, country,
|
||||
max_age, min_age,
|
||||
loc_status
|
||||
FROM now_lr
|
||||
LEFT JOIN now_lau ON now_lau.luid = now_lr.luid
|
||||
LEFT JOIN now_loc ON now_loc.lid = now_lau.lid;
|
||||
|
||||
/*** creates view used by reference species form ***/
|
||||
DROP VIEW IF EXISTS now_v_reference_species;
|
||||
CREATE VIEW now_v_reference_species
|
||||
AS
|
||||
SELECT DISTINCT
|
||||
rid,
|
||||
com_species.species_id, order_name, family_name, subfamily_name,
|
||||
subclass_or_superorder_name, suborder_or_superfamily_name,
|
||||
genus_name, species_name, unique_identifier,
|
||||
sp_status
|
||||
FROM now_sr
|
||||
LEFT JOIN now_sau ON now_sau.suid = now_sr.suid
|
||||
LEFT JOIN com_species ON com_species.species_id=now_sau.species_id;
|
||||
|
||||
/*** creates view used by reference time unit bound ***/
|
||||
DROP VIEW IF EXISTS now_v_reference_tubound;
|
||||
CREATE VIEW now_v_reference_tubound
|
||||
AS
|
||||
SELECT DISTINCT
|
||||
rid,
|
||||
now_tu_bound.bid, b_name, age, b_comment
|
||||
FROM now_tur
|
||||
LEFT JOIN now_tu_bound ON now_tu_bound.bid = now_tur.bid;
|
||||
|
||||
/*** creates view used by reference header ***/
|
||||
DROP VIEW IF EXISTS now_v_reference_header;
|
||||
CREATE VIEW now_v_reference_header
|
||||
AS
|
||||
SELECT
|
||||
rid
|
||||
FROM ref_ref
|
||||
WHERE used_now = 1;
|
||||
|
||||
/*** creates view used by locality export ***/
|
||||
DROP VIEW IF EXISTS now_v_export_loc;
|
||||
CREATE VIEW now_v_export_loc
|
||||
AS
|
||||
SELECT
|
||||
now_loc.lid,
|
||||
loc_name, country, state, county,
|
||||
dms_lat, dms_long, dec_lat, dec_long, altitude,
|
||||
max_age, bfa_max, bfa_max_abs, frac_max,
|
||||
min_age, bfa_min, bfa_min_abs, frac_min,
|
||||
chron, age_comm,
|
||||
basin, subbasin,
|
||||
appr_num_spm, gen_loc,
|
||||
GROUP_CONCAT(now_syn_loc.synonym SEPARATOR ', ') AS loc_synonyms,
|
||||
estimate_precip, estimate_temp, estimate_npp,
|
||||
pers_woody_cover, pers_pollen_ap, pers_pollen_nap, pers_pollen_other,
|
||||
hominin_skeletal_remains, bipedal_footprints, stone_tool_technology, stone_tool_cut_marks_on_bones,
|
||||
technological_mode_1, cultural_stage_1, regional_culture_1,
|
||||
technological_mode_2, cultural_stage_2, regional_culture_2,
|
||||
technological_mode_3, cultural_stage_3, regional_culture_3,
|
||||
loc_status,
|
||||
'\\N' mean_hypsodonty
|
||||
FROM now_loc
|
||||
LEFT JOIN now_syn_loc ON now_loc.lid = now_syn_loc.lid
|
||||
GROUP BY now_loc.lid;
|
||||
|
||||
/*** creates view used by locality-species export ***/
|
||||
DROP VIEW IF EXISTS now_v_export_locsp;
|
||||
CREATE VIEW now_v_export_locsp
|
||||
AS
|
||||
SELECT
|
||||
/* LOCALITY */
|
||||
now_loc.lid,
|
||||
loc_name, country, state, county,
|
||||
dms_lat, dms_long, dec_lat, dec_long, altitude,
|
||||
max_age, bfa_max, bfa_max_abs, frac_max,
|
||||
min_age, bfa_min, bfa_min_abs, frac_min,
|
||||
chron, age_comm,
|
||||
basin, subbasin,
|
||||
appr_num_spm, gen_loc,
|
||||
(SELECT GROUP_CONCAT(synonym SEPARATOR ', ') FROM now_syn_loc WHERE now_syn_loc.lid=now_loc.lid) AS loc_synonyms,
|
||||
estimate_precip, estimate_temp, estimate_npp,
|
||||
pers_woody_cover, pers_pollen_ap, pers_pollen_nap, pers_pollen_other,
|
||||
hominin_skeletal_remains, bipedal_footprints, stone_tool_technology, stone_tool_cut_marks_on_bones,
|
||||
technological_mode_1, cultural_stage_1, regional_culture_1,
|
||||
technological_mode_2, cultural_stage_2, regional_culture_2,
|
||||
technological_mode_3, cultural_stage_3, regional_culture_3,
|
||||
loc_status,
|
||||
'\\N' mean_hypsodonty,
|
||||
|
||||
/* SPECIES */
|
||||
com_species.species_id,
|
||||
order_name, family_name, subfamily_name, subclass_or_superorder_name, suborder_or_superfamily_name, genus_name, species_name, unique_identifier,
|
||||
taxonomic_status,
|
||||
com_species.body_mass,
|
||||
sv_length,
|
||||
sd_size, sd_display,
|
||||
tshm, tht, crowntype,
|
||||
diet1, diet2, diet3,
|
||||
locomo1, locomo2, locomo3,
|
||||
horizodonty,
|
||||
com_species.microwear, com_species.mesowear,
|
||||
com_species.mw_or_high, com_species.mw_or_low,
|
||||
com_species.mw_cs_sharp, com_species.mw_cs_round, com_species.mw_cs_blunt,
|
||||
com_species.mw_scale_min, com_species.mw_scale_max, com_species.mw_value,
|
||||
cusp_shape, cusp_count_buccal, cusp_count_lingual, loph_count_lon, loph_count_trs,
|
||||
fct_al, fct_ol, fct_sf, fct_ot, fct_cm,
|
||||
sp_status, sp_comment,
|
||||
(SELECT GROUP_CONCAT(CONCAT(syn_genus_name, " ", syn_species_name) ORDER BY syn_genus_name SEPARATOR ":")
|
||||
FROM com_taxa_synonym WHERE com_taxa_synonym.species_id=com_species.species_id) AS sp_synonyms,
|
||||
(SELECT GROUP_CONCAT(syn_comment ORDER BY syn_genus_name SEPARATOR ":")
|
||||
FROM com_taxa_synonym WHERE com_taxa_synonym.species_id=com_species.species_id) AS sp_synonyms_comment,
|
||||
|
||||
/* LOC-SP */
|
||||
now_ls.id_status, now_ls.orig_entry, now_ls.source_name,
|
||||
now_ls.microwear AS ls_microwear, now_ls.mesowear AS ls_mesowear,
|
||||
now_ls.mw_or_low AS ls_mw_or_low, now_ls.mw_or_high AS ls_mw_or_high,
|
||||
now_ls.mw_cs_sharp AS ls_mw_cs_sharp, now_ls.mw_cs_round AS ls_mw_cs_round, now_ls.mw_cs_blunt AS ls_mw_cs_blunt,
|
||||
now_ls.mw_scale_min AS ls_mw_scale_min, now_ls.mw_scale_max AS ls_mw_scale_max, now_ls.mw_value AS ls_mw_value,
|
||||
'\\N' AS ls_mesowear_score
|
||||
FROM now_ls
|
||||
LEFT JOIN now_loc ON now_ls.lid = now_loc.lid
|
||||
LEFT JOIN com_species ON now_ls.species_id = com_species.species_id
|
||||
/*LEFT JOIN com_taxa_synonym ON now_ls.species_id = com_taxa_synonym.species_id*/
|
||||
WHERE
|
||||
used_now = 1;
|
||||
|
||||
/*** creates view used by non-associated (not in now_ls) com_species export ***/
|
||||
DROP VIEW IF EXISTS now_v_export_nonassociated_species;
|
||||
CREATE VIEW now_v_export_nonassociated_species
|
||||
AS
|
||||
SELECT
|
||||
/* LOCALITY */
|
||||
'\\N' AS lid,
|
||||
'\\N' AS loc_name, '\\N' AS country, '\\N' AS state, '\\N' AS county,
|
||||
'\\N' AS dms_lat, '\\N' AS dms_long, '\\N' AS dec_lat, '\\N' AS dec_long, '\\N' AS altitude,
|
||||
'\\N' AS max_age, '\\N' AS bfa_max, '\\N' AS bfa_max_abs, '\\N' AS frac_max,
|
||||
'\\N' AS min_age, '\\N' AS bfa_min, '\\N' AS bfa_min_abs, '\\N' AS frac_min,
|
||||
'\\N' AS chron, '\\N' AS age_comm,
|
||||
'\\N' AS basin, '\\N' AS subbasin,
|
||||
'\\N' AS appr_num_spm, '\\N' AS gen_loc,
|
||||
'\\N' AS loc_synonyms,
|
||||
'\\N' AS estimate_precip, '\\N' AS estimate_temp, '\\N' AS estimate_npp,
|
||||
'\\N' AS pers_woody_cover, '\\N' AS pers_pollen_ap, '\\N' AS pers_pollen_nap, '\\N' AS pers_pollen_other,
|
||||
'\\N' AS hominin_skeletal_remains, '\\N' AS bipedal_footprints, '\\N' AS stone_tool_technology, '\\N' AS stone_tool_cut_marks_on_bones,
|
||||
'\\N' AS technological_mode_1, '\\N' AS cultural_stage_1, '\\N' AS regional_culture_1,
|
||||
'\\N' AS technological_mode_2, '\\N' AS cultural_stage_2, '\\N' AS regional_culture_2,
|
||||
'\\N' AS technological_mode_3, '\\N' AS cultural_stage_3, '\\N' AS regional_culture_3,
|
||||
'\\N' AS loc_status,
|
||||
'\\N' mean_hypsodonty,
|
||||
|
||||
/* SPECIES */
|
||||
species_id,
|
||||
order_name, family_name, subfamily_name, subclass_or_superorder_name, suborder_or_superfamily_name, genus_name, species_name, unique_identifier,
|
||||
taxonomic_status,
|
||||
body_mass,
|
||||
sv_length,
|
||||
sd_size, sd_display,
|
||||
tshm, tht, crowntype,
|
||||
diet1, diet2, diet3,
|
||||
locomo1, locomo2, locomo3,
|
||||
horizodonty,
|
||||
microwear, mesowear,
|
||||
mw_or_high, mw_or_low,
|
||||
mw_cs_sharp, mw_cs_round, mw_cs_blunt,
|
||||
mw_scale_min, mw_scale_max, mw_value,
|
||||
cusp_shape, cusp_count_buccal, cusp_count_lingual, loph_count_lon, loph_count_trs,
|
||||
fct_al, fct_ol, fct_sf, fct_ot, fct_cm,
|
||||
sp_status, sp_comment,
|
||||
(SELECT GROUP_CONCAT(CONCAT(syn_genus_name, " ", syn_species_name) ORDER BY syn_genus_name SEPARATOR ":")
|
||||
FROM com_taxa_synonym WHERE com_taxa_synonym.species_id=com_species.species_id) AS sp_synonyms,
|
||||
(SELECT GROUP_CONCAT(syn_comment ORDER BY syn_genus_name SEPARATOR ":")
|
||||
FROM com_taxa_synonym WHERE com_taxa_synonym.species_id=com_species.species_id) AS sp_synonyms_comment,
|
||||
|
||||
/* LOC-SP */
|
||||
'\\N' AS id_status, '\\N' AS orig_entry, '\\N' AS source_name,
|
||||
'\\N' AS ls_microwear, '\\N' AS ls_mesowear,
|
||||
'\\N' AS ls_mw_or_low, '\\N' AS ls_mw_or_high,
|
||||
'\\N' AS ls_mw_cs_sharp, '\\N' AS ls_mw_cs_round, '\\N' AS ls_mw_cs_blunt,
|
||||
'\\N' AS ls_mw_scale_min, '\\N' AS ls_mw_scale_max, '\\N' AS ls_mw_value,
|
||||
'\\N' AS ls_mesowear_score
|
||||
FROM com_species
|
||||
WHERE
|
||||
species_id NOT IN (SELECT species_id FROM now_ls) AND used_now = 1;
|
||||
|
||||
/*** creates view used by people list ***/
|
||||
DROP VIEW IF EXISTS now_v_people_list;
|
||||
CREATE VIEW now_v_people_list
|
||||
AS
|
||||
SELECT
|
||||
initials, first_name, surname, full_name, format, email, user_id, organization, country, password_set, used_now
|
||||
FROM com_people
|
||||
WHERE
|
||||
used_now = 1;
|
||||
|
||||
/*** creates view used by project list ***/
|
||||
DROP VIEW IF EXISTS now_v_project_list;
|
||||
CREATE VIEW now_v_project_list
|
||||
AS
|
||||
SELECT
|
||||
pid, com_people.full_name, proj_code, proj_name, proj_status, proj_records
|
||||
FROM now_proj
|
||||
LEFT JOIN com_people ON com_people.initials = now_proj.contact;
|
||||
|
||||
/*** creates view used by user project list ***/
|
||||
DROP VIEW IF EXISTS now_v_project_list_user;
|
||||
CREATE VIEW now_v_project_list_user
|
||||
AS
|
||||
SELECT
|
||||
now_proj.pid, com_people.full_name, now_proj_people.initials AS nppinitials, proj_code, proj_name, proj_status, proj_records
|
||||
FROM now_proj
|
||||
LEFT JOIN com_people ON com_people.initials = now_proj.contact
|
||||
INNER JOIN now_proj_people ON now_proj.pid = now_proj_people.pid;
|
||||
|
||||
/*** creates view used by museum list ***/
|
||||
DROP VIEW IF EXISTS now_v_museum_list;
|
||||
CREATE VIEW now_v_museum_list
|
||||
AS
|
||||
SELECT
|
||||
museum, institution, alt_int_name, city, state_code, state, country, used_now
|
||||
FROM com_mlist
|
||||
WHERE
|
||||
used_now=1;
|
||||
|
||||
/*** creates view used by sedimentary structure list ***/
|
||||
DROP VIEW IF EXISTS now_v_ss_values_list;
|
||||
CREATE VIEW now_v_ss_values_list
|
||||
AS
|
||||
SELECT
|
||||
ss_value, category
|
||||
FROM now_ss_values;
|
||||
|
||||
/*** creates view used by collection method list ***/
|
||||
DROP VIEW IF EXISTS now_v_coll_meth_values_list;
|
||||
CREATE VIEW now_v_coll_meth_values_list
|
||||
AS
|
||||
SELECT
|
||||
coll_meth_value
|
||||
FROM now_coll_meth_values;
|
||||
|
||||
/*** creates view for fetching locality statistics ***/
|
||||
DROP VIEW IF EXISTS now_v_locality_statistics;
|
||||
CREATE VIEW now_v_locality_statistics
|
||||
AS
|
||||
SELECT
|
||||
year(lau_date) AS year,
|
||||
month(lau_date) AS month,
|
||||
surname
|
||||
FROM now_lau
|
||||
LEFT JOIN com_people ON now_lau.lau_authorizer = com_people.initials
|
||||
GROUP BY 1, 2, com_people.surname, com_people.first_name
|
||||
ORDER BY 1 DESC, 2 DESC, count(*) DESC;
|
||||
|
||||
/*** creates view for fetching species statistics ***/
|
||||
DROP VIEW IF EXISTS now_v_species_statistics;
|
||||
CREATE VIEW now_v_species_statistics
|
||||
AS
|
||||
SELECT
|
||||
year(sau_date) AS year,
|
||||
month(sau_date) AS month,
|
||||
surname
|
||||
FROM now_sau
|
||||
LEFT JOIN com_people ON now_sau.sau_authorizer = com_people.initials
|
||||
GROUP BY 1, 2, com_people.surname, com_people.first_name
|
||||
ORDER BY 1 DESC, 2 DESC, count(*) DESC;
|
||||
|
||||
/*** creates view for getting the count of public locality-species records ***/
|
||||
DROP VIEW IF EXISTS now_v_public_locality_species;
|
||||
CREATE VIEW now_v_public_locality_species
|
||||
AS
|
||||
SELECT
|
||||
count(now_ls.lid) AS count
|
||||
FROM now_ls
|
||||
LEFT JOIN com_species ON com_species.species_id=now_ls.species_id
|
||||
LEFT JOIN now_loc ON now_loc.lid = now_ls.lid
|
||||
WHERE
|
||||
sp_status=0 AND loc_status=0 AND used_now=1 AND
|
||||
now_ls.lid NOT IN (SELECT DISTINCT now_plr.lid FROM now_plr JOIN now_proj ON now_plr.pid = now_proj.pid WHERE now_proj.proj_records = 1);
|
||||
|
||||
/**
|
||||
* TIME UNIT / BOUND
|
||||
**/
|
||||
|
||||
/*** creates view used by time unit / bound updates form ***/
|
||||
DROP VIEW IF EXISTS now_v_time_unit_and_bound_updates;
|
||||
CREATE VIEW now_v_time_unit_and_bound_updates
|
||||
AS
|
||||
SELECT
|
||||
time_update_id, now_time_update.tu_name, tu_display_name, tuid, lower_buid, upper_buid, coordinator, authorizer, date, comment
|
||||
FROM now_time_update, now_time_unit
|
||||
WHERE now_time_update.tu_name = now_time_unit.tu_name;
|
||||
|
||||
/*** creates view used by time unit bound list ***/
|
||||
DROP VIEW IF EXISTS now_v_time_bound_list;
|
||||
CREATE VIEW now_v_time_bound_list
|
||||
AS
|
||||
SELECT
|
||||
bid, b_name, age, b_comment
|
||||
FROM now_tu_bound;
|
||||
|
||||
/*** creates view used by time bound header ***/
|
||||
DROP VIEW IF EXISTS now_v_time_bound_header;
|
||||
CREATE VIEW now_v_time_bound_header
|
||||
AS
|
||||
SELECT
|
||||
bid, b_name, age, b_comment
|
||||
FROM now_tu_bound;
|
||||
|
||||
/*** creates view used by time bound header ***/
|
||||
DROP VIEW IF EXISTS now_v_time_bound;
|
||||
CREATE VIEW now_v_time_bound
|
||||
AS
|
||||
SELECT
|
||||
bid, b_name, age, b_comment
|
||||
FROM now_tu_bound;
|
||||
|
||||
/*** creates view used by time unit list in time bound page ***/
|
||||
DROP VIEW IF EXISTS now_v_time_bounds_in_time_units;
|
||||
CREATE VIEW now_v_time_bounds_in_time_units
|
||||
AS
|
||||
SELECT
|
||||
bid, tu_name, tu_display_name, up_bnd, low_bnd, rank, sequence, tu_comment
|
||||
FROM now_time_unit
|
||||
LEFT JOIN now_tu_bound ON now_tu_bound.bid = now_time_unit.low_bnd OR now_tu_bound.bid = now_time_unit.up_bnd;
|
||||
|
||||
/*** creates view used by time bound updates form ***/
|
||||
DROP VIEW IF EXISTS now_v_time_bound_updates;
|
||||
CREATE VIEW now_v_time_bound_updates
|
||||
AS
|
||||
SELECT
|
||||
now_bau.buid, bid, bau_coordinator, bau_authorizer, bau_date,
|
||||
GROUP_CONCAT(now_br.rid) as rids
|
||||
FROM now_bau, now_br
|
||||
WHERE now_bau.buid = now_br.buid
|
||||
GROUP BY now_bau.buid;
|
||||
|
||||
/*** creates view used by time bound updates header form ***/
|
||||
DROP VIEW IF EXISTS now_v_time_bound_update_header;
|
||||
CREATE VIEW now_v_time_bound_update_header
|
||||
AS
|
||||
SELECT
|
||||
buid,
|
||||
bau_date AS date,
|
||||
b_authorizer.full_name AS authorizer,
|
||||
b_coordinator.full_name AS coordinator,
|
||||
bau_comment AS comment,
|
||||
now_tu_bound.bid, b_name
|
||||
FROM now_bau
|
||||
LEFT JOIN com_people AS b_authorizer ON b_authorizer.initials = now_bau.bau_authorizer
|
||||
LEFT JOIN com_people AS b_coordinator ON b_coordinator.initials = now_bau.bau_coordinator
|
||||
LEFT JOIN now_tu_bound ON now_tu_bound.bid = now_bau.bid;
|
||||
|
||||
/*** creates view used by time unit localities form ***/
|
||||
DROP VIEW IF EXISTS now_v_time_unit_localities;
|
||||
CREATE VIEW now_v_time_unit_localities
|
||||
AS
|
||||
SELECT
|
||||
tu_name, tu_display_name, lid, loc_name, bfa_min, bfa_max, loc_status
|
||||
FROM now_time_unit
|
||||
LEFT JOIN now_loc ON now_loc.bfa_min = now_time_unit.tu_name OR now_loc.bfa_max = now_time_unit.tu_name;
|
||||
Reference in New Issue
Block a user